SECOND PLANT MICROARRAY SHORT COURSE ON DESIGN AND ANALYSIS OF PLANT MICROARRAY EXPERIMENTATION
Details and Registration Information: pdf MS Word
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Overview:
The University of Alabama at Birmingham's Section on Statistical Genetics is pleased to offer a National Science Foundation-funded Short Course on Design and Analysis of Plant Microarray Experimentation. This meeting will be held immediately prior to the joint annual meeting of the American Society of Plant Biologists and the Canadian Society of Plant Physiologists in Boston MA on August 2 - 4.
This course is designed to help investigators studying the genetics of plant traits to better understand and use statistical genetics methods, and thereby further their ability to meet their scientific objectives. It is aimed at established investigators, post-doctoral fellows, and advanced graduate students. The course is two and one half days in length, and offers a vigorous interactive educational program designed to enhance researcher's ability to implement and, importantly, interpret the results of sophisticated microarray analysis in plant research.
Women, members of underrepresented minority groups and individuals with disabilities are strongly encouraged to apply.
Tuition is $100 and does not include the cost of food, travel or lodging. Limited funds are available on a competitive basis for travel scholarships with preference given to graduate students and post-doctoral fellows.
Registration will be limited to 45, so please apply prior to June 10. Accepted applicants will be notified by June 12.
Schedule of Events:
| DATE | TIME | SPEAKER/MODERATOR | TOPIC | Resource(s) |
| August 2, 2006 | 8:00 - 8:15 am | David B. Allison | Welcome | |
| 8:15 - 9:45 am | Naomi S. Altman | Introduction to Statistics | ||
| 9:45 - 10:30 am | David Galbraith | Survey of Plant microarrays | ||
| 10:30 - 10:45 am | Break | |||
| 10:45 - 12:15 pm | Guilherme Rosa | Designing the Experiment, including loops, replication and sample size. Biological replication. What is a Hypothesis? | ||
| 12:15 - 1:30 pm | Lunch | |||
| 1:30 - 2:15 pm | Robert Tempelman | Image processing, analysis, QC and normalization - Two color | ||
| 2:15 - 3:00 pm | Ryung S. Kim | Preprocessing of oligonucleotide microarray: normalization and expression index computation - Affymetrix | ||
| 3:00 - 3:15 pm | Break | |||
| 3:15 - 4:00 pm | Xiangqin Cui | Inferential Statistical procedures- linear models | ||
| 4:00 - 4:45 pm | David B. Allison | Issues in inferential statistical analysis of microarray data. | ||
| 4:45 - 5:30 pm | Gary Gadbury | FDR and Multiple Testing | ||
| 5:30 - 6:00 pm | Q & A | |||
| August 3, 2006 | 8:00 - 8:15 am | Grier P. Page | Introduction | |
| 8:15 - 9:15 am | Daniel S. Nettleton | Cluster analysis | ||
| 9:15 - 10:15 am | Stephanie A. Monks | Classification and discriminant analysis | ||
| 10:15 - 10:30 am | Break | |||
| 10:30 - 11:30 am | Julie Dickerson | Ontologies and annotation | ||
| 11:30 - 12:30 pm | Bruce Aronow | How to interpret microarray data | ||
| 12:30 - 1:45 pm | Lunch | |||
| 1:45 - 2:30 pm | Grier P. Page | Quality Control in Microarray Experiments | ||
| 2:30 - 3:30 pm | Sorin Draghici | Enrichment Analysis | No Video Available | |
| 3:30 - 3:45 pm | Break | |||
| 3:45 - 4:30 pm | Robert W. Williams | Integromics and EQTL analysis | ||
| 4:30 - 5:15 pm | Willem Albert Rensink | Bioinformatics tools and web sites and software | ||
| 5:15 - 5:30 pm | Questions and Wrap up | |||
| 7:00 pm - | All | Dinner with faculty and students Queen Mary Room, Dinner Menu | ||
| August 4, 2006 | 8:00 - 8:15 am 8:15 - 9:00 am 9:00 - 9:30 am 9:30 - 9:45 am 9:45 - 10:00 am 10:00 - 10:45 am 10:45 - 11:30 am 11:30 - 12:00 pm Aquitania Rm | Grier P. Page Naomi Altman Sorin Draghici Grier P. Page Willem Albert Rensink Bruce Aronow Page & Cui | Introduction Software Demo-Bioconductor Software Demo-Onto-Tools Software Demo-PowerAtlas Break Software Demo-Commercial Tools Software Demo-GeneSpring Software Demo-HDBStat! & MAANOVA | |
| 8:00 - 12:00 pm Michelangelo Rm | Faculty | Meet the Professors | ||
| 12:00 - 1:00 pm | Lunch | |||
| 1:00 - 3:00 pm Aquitania Rm | David Finkelstein | Data Analysis Walk-through | ||
| 3:15 - 5:00 pm Aquitania Rm | All | Meet the Professors: analysis assistance |
External Faculty:
- Naomi Altman, Ph.D., Pennsylvania State University
- Bruce Aronow, Ph.D., Cincinnati Children's Hospital Medical Center
- Julie A. Dickerson, Ph.D., Iowa State University
- Sorin Draghici, Ph.D., Wayne State University
- David Finkelstein, Ph.D. , St. Jude Children's Research Hospital
- Gary Gadbury, Ph.D., University of Missouri-Rolla
- David Galbraith, Ph.D., University of Arizona
- Ryung S. Kim, Ph.D., Worcester Polytechnic Institute
- Stephanie Monks, Ph.D., Oklahoma State University
- Daniel S. Nettleton, Ph.D., Iowa State University
- Willem Albert Rensink, Ph.D., TIGR, The Institute for Genomic Research
- Guilherme J. M. Rosa, Ph.D., University of Wisconsin - Madison
- Robert J. Tempelman, Ph.D., Michigan State University
- Robert W. Williams, Ph.D., University of Tennessee, Memphis
UAB Faculty:
Contact Information:
Logistics: Richard Sarver
Department of Biostatistics
Ryals Public Health Bldg 414
1665 University Blvd
University of Alabama at Birmingham
Birmingham, AL 35294-0022
Phone: (205) 975-9169/9170
Email: rsarver@uab.edu
Scientific: Grier Page, Ph.D.
Department of Biostatistics
Ryals Public Health Bldg 317D
1665 University Blvd
University of Alabama at Birmingham
Birmingham, AL 35294-0022
Phone: (205) 934-4930
Email: gpage@uab.edu
Funded by: National Science Foundation
Sponsors:
![]() | Section on Statistical Genetics, University of Alabama at Birmingham |
NSF Disclaimer:
This material is based upon work supported by the National Science Foundation under Grant No. (NSF 0217651). Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation.
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