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Xiangqin Cui, Ph.D.

Xiangqin Cui, Ph.D. Department of Biostatistics
Ryals Public Health Bldg, 317
University of Alabama at Birmingham
Birmingham, AL 35294
Phone: (205) 996-4154
Fax: (205) 975-2540
E-mail: xcui@ms.soph.uab.edu
Full CV


Dr. Cui received her Ph.D at Iowa State University studying maize genetics under the mentorship of Dr. Patrick Schnable. She then took her postdoctoral training in statistical genetics under the mentorship of Dr. Gary Churchill at the Jackson Laboratory. Dr. Cui joined SSG in Aug 2004 as an Asst Professor with a joint appointment in the Biostatistics Department and the Department of Medicine (Division of Genetic and Translational Medicine). Her research interest includes experimental design and data analysis of microarray, expression of alternative transcripts, equivalence study of gene expression, and analysis of quantitative trait loci (QTL) mapping data.

Publications
 

  • 2009
  • 2008
  • 2007
  • 2006
  • 2005
  • pre 2005
  1. Xiangqin Cui, Ann, E. Loraine (2009) Consistency Analysis of Redundant Probe Sets on Affymetrix Three-Prime Expression Arrays and Applications to Differential mRNA Processing. PLoS ONE 4(1): e4229. [PMID: 19165320]
     
  2. P.A. Ioannidis, David B. Allison, Catherine Ball, Cesare Furlanello, Jon Mangion, Grier P. Page, Vera van Noort, Issa Coulibaly, Xiangqin Cui, Aedin Culhane, Mario Falci, Laurence Game, Giuseppe Jurman, Tapan Mehta, Enrico Petretto, Jelai Wang, Myles Axton (2009) Repeatability of published microarray gene expression analyses. Nature Genetics 41, 149 – 155. [PMID: 19174838] [DOI:10.1038/ng.295]
     
  3. Huifen Zhu, Guo-Jing Li1, Lei Ding, Xiangqin Cui, Howard Berg, Sarah M. Assmann, Yiji Xia (2009) Arabidopsis Extra Large G Protein 2 (XLG2) interacts with the Gβ subunit of heterotrimeric G protein and functions in disease resistance. Molecular Plant 2(3):513-525 [DOI:10.1093/mp/ssp001]
     
  4. Lang Chen, Grier P. Page, Tapan Mehta, Rui Feng, Xiangqin Cui (2009). Single Nucleotide Polymorphisms Affect both cis- and trans-eQTLs. Genomics 93(6):501-8 [PMID: 19248827]
  1. Michal Mrug, Juling Zhou, Yong Woo, Xiangqin Cui, Alexander J. Szalai1, Jan Novak, Gary A. Churchill, and Lisa M. Guay-Woodford "Overexpression of innate immune response genes in a model of recessive polycystic kidney disease" Kidney International (2008) 73, 63–76; [PMID: 17960140]
     
  1. Brand J.P.L., Chen L, Cui, XQ., Bartolucci, A.A, Page, G.P., Kim, K., Barnes, S., Srinivasasainagendra, V., Beasley, T.M., Allison, D.B. (2007) "An Adaptive Alpha-spending Algorithm Improves the Power of Statistical Inference in Microarray Data Analysis" Bioinformation, 1(10) 384-389 [PMID: 17597927]
     
  2. Ruden, D. M., XQ Cui, A. Loraine, A., Ye, J., Bynum, K., Kim, N. C., De Luca, M., Garfinkel, M. D., Lu, X. (2007). Methods for nutrigenomics and longevity studies in Drosophila: effects of diets high in sucrose, palmitic acid, soy, or beef. Methods Mol Biol. 2007;371:111-41 [PMID: 17634578]
     
  3. Wu, X., Wang, J., Cui, XQ., Maianu, L., Rhees, B., Rosinski, J., So, W.V., Willi, S.M., Osier M.V., Hill, H.S., Page, G.P., Allison, D.B., Martin, M., and Timothy Garvey, WT. (2007) The effect of insulin on expression of genes and biochemical pathways in human skeletal muscle: Endocrine; Volume 31, No. 1, pp. 5 – 17. [PMID: 17709892]
     
  4. Gao YZ, Guo SY, Yin QZ, Cui XQ, Hisamitsu T, Jiang XH (2007) Possible involvement of integrin signaling pathway in the process of recovery from restraint stress in rats. Neurosci Bull. 2007 Jul;23 (4):229-35. [PMID: 17687398]
  1. Allison DB, Cui XQ, Page GP, Sabripour M (2006). Microarray data analysis: from disarray to consolidation and consensus. Nat Rev Genet. Jan. 7:55-65. [PMID: 16369572]
     
  2. Cui, XQ. and A. E. Loraine (2006) Global Correlation Analysis Between Redundant Probe Sets Using A Large Collection Of Arabidopsis Ath1 Expression Profiling Data. CSB2006 Proceedings of the LSS Computational Systems Bioinformatics Conference. Stanford, CA, August, p 223-226. [PMID: 17369640]
     
  3. Cui, XQ, Jason Affourtit, Keith R. Shockley, Yong Woo, and Gary A. Churchill(2006) Inheritance Patterns of Transcript Levels in F1 Hybrid Mice, Genetics 174:627-637. [PMID: 16888332]
     
  4. Laudencia-Chingcuanco, Debbie L., Stamova B.S., Laxo G.R., Cui XQ, and Anderson OD (2006) Analysis of the wheat endosperm transcriptome, J. Appl. Genet 47:287-302. [PMID: 17132893]
     
  1. Cui XQ, J. T.G. Hwang, J. Qiu, N.J. Blades and G. Churchill (2005) Improved statistical tests for differential gene expression by shrinking variance component estimates. Biostatistics Jan. 6(1):59-75. [PMID: 15618528]
     
  2. Yao H, Guo L, Fu Y, Borsuk LA, Wen TJ, Skibbe DS, Cui XQ, Scheffler BE, Cao J, Emrich SJ, Ashlock DA, Schnable PS. (2005) Evaluation of five ab initio gene prediction programs for the discovery of maize genes. Plant Mol Biol. Feb 57(3):445-60. [PMID: 15830133]
     
  3. Mrug M., R. Li, XQ Cui, T. R. Schoeb, G. A. Churchill, and L. M.Guay-Woodford (2005) Kinesin-Related Protein 12 is a Candidate Polycystic Kidney Disease Modifier in the cpk Mouse. J Am Soc Nephrol. 16(4):905-16. [PMID: 15728779]
     
  4. Mrug M , Schoeb TR, Li R, Cui X, Churchill GA , Guay-Woodford LM (2005) Kinesin 12 is predicted to modulate multiple phenotypes in the cpk mouse model of ARPKD. J Am Soc Nephrol 15:216A. [PMID: 15728779]
  1. Song WQ, XQ Cui, WS Xu, XL Li, YK Peng and RY Chen (1996) Micro-dissection and amplification of the terminal region from the long arm of the big M chromosome in Vica faba. Chinese Science Bulletin 41: 361-364
     
  2. Cui XQ, RP Wise and PS Schnable (1996) The rf2 nuclear restorer gene of male sterile T-cytoplasm maize. Science 272:1334-1336. [PMID: 8650543]
     
  3. Liu F *, XQ Cui *, HT Horner, H Weiner and PS Schnable (2001) Mitochondrial aldehyde dehydrogenase activity is required for male fertility in maize. Plant Cell 13: 1063-1078 * These authors contributed equally to this work. [PMID: 11340182]
     
  4. Skibbe DS, Liu F, Wen TJ, Yandeau MD, Cui XQ, Jun Cao J, Simmons CR, and PS Schnable (2002) Characterization of the Aldehyde Dehydrogenase Gene Families of Zea mays and Arabidopsis. Plant Molecular Biology 48: 751-764. [PMID: 11999848]
     
  5. Cui XQ, AP Hsia, DA Ashlock, RP Wise and PS Schnable. (2003) Alternative transcription initiation sites and polyadenylation sites are recruited during Mu suppression at the rf2a locus of maize. Genetics, 163: 685-698. [PMID: 12618406]
     
  6. Cui XQ, BE Scheffler, C Simmons, RB Meeley, and PS Schnable. Mutations in the maize pdc3 gene reduce tolerance to anaerobic stress (in preparation).
     
  7. Cui XQ, MK Kerr and GA Churchill. Transformations for cDNA microarray data.(2003) Statistical Applications in Genetics and Molecular Biology. vol 2, issue 1 article 4. [PMID: 16646782]
     
  8. Wu H, MK Kerr, XQ Cui, and GA Churchill. (2003) MAANOVA: A Software Package for the Analysis of Spotted cDNA Microarray Experiments. Chapter 14 in The analysis of gene expression data. Edited by Parmigiani G. et al. Springer, New York. http://www.jax.org/staff/churchill/labsite/pubs/Wu_maanova.pdf
     
  9. Cui XQ and GA Churchill. (2003) Statistical tests for differential expression in cDNA microarray experiments. Genome Biology, 4:210. [PMID: 12702200]
     
  10. Cui XQ and GA Churchill. (2003) How many mice and how many arrays? replication in mouse cDNA microarray experiments. in “Methods of Microarray Data Analysis III”, Edited by Kimberly F. Johnson and Simon M. Lin. Kluwer Academic Publishers, Norwell, MA. pp 139-154.
     
  11. Lobenhofer E.K., XQ Cui, L. Bennett, P.L. Cable, G.A. Churchill and C.A. Afshari (2004) Exploration of Low Dose Estrogen Effects: Identification of No Observed Transcriptional Effect Level (NOTEL). Toxicol Pathol. Jul-Aug; 32(4):482-92. [PMID: 15223774]