DISEQUILIBRIUM AND ASSOCIATION ANALYSIS

Zhang K, Zhao H. (2006). A comparison of several methods for haplotype frequency estimation and haplotype reconstruction for tightly linked markers from general pedigrees. Genetic Epidemiology, 30, 423-37.

Redden DT, Allison DB. (2006). The Effect of Assortative Mating upon Genetic Association Studies: Spurious Associations and Population Substructure in the Absence of Admixture. Behavior Genetics, 36, 678-686.

Liu N, Zhao H. (2006). A non-parametric approach to population structure inference using multilocus genotypes. Human Genomics, 2, 353-64.

Wu B, Liu N, Zhao H. (2006). PSMIX: an R package for population structure inference via maximum likelihood method. BMC Bioinformatics, 7, 317.

Liu N, Beerman I, Lifton R, Zhao H. (2006). Haplotype analysis in the presence of informatively missing genotype data. Genetic Epidemiology, 30, 290-300.

Alarcon GS, Beasley TM, Roseman JM, McGwin G Jr, Fessler BJ, Bastian HM, Vila LM, Tan F, Reveille JD; LUMINA Study Group. (2005). Ethnic disparities in health and disease: the need to account for ancestral admixture when estimating the genetic contribution to both (LUMINA XXVI). Lupus, 14, 67-8.

Tiwari HK, Holt J, George V, Beasley TM, Amos CI, Allison DB. (2005). New joint covariance- and marginal-based tests for association and linkage for quantitative traits for random and non-random sampling. Genetic Epidemiology, 28, 48-57.

Huang S, Wang S, Liu N, Chen L, Oh C, Zhao H. (2005). Whole-genome association analysis to identify markers associated with recombination rates using single-nucleotide polymorphisms and microsatellites. BMC Genet, 6 (Suppl 1), S51.

Liu N, Chen L, Wang S, Oh C, Zhao H. (2005). Comparison of single-nucleotide polymorphisms and microsatellites in inference of population structure. BMC Genet, 6 (Suppl 1), S26.

Zhang K, Qin Z, Chen T, Liu J, Waterman M, Sun F. (2005). HapBlock: Haplotype Block Partitioning and Tag SNP Selection Software Using A Set of Dynamic Programming Algorithms. Bioinformatics, 21, 131-134.

Zhang K, Sun F, Zhao H, (2005). HAPLORE: A Program for Haplotype Reconstruction in General Pedigrees without Recombination. Bioinformatics, 21: 90-103.

Tiwari HK, Holt J, George V, Beasley TM, Amos CI, Allison DB. (2004). New Joint Covariance- and Marginal-based Tests for Association & Linkage for Quantitative Traits for random and non-random sampling. Genetic Epidemiology, 28, 48-57.

Douglas G, Reilly C, Dooley MA, Page GP, Cooper G, Gilkeson G. (2004). Angiotensin-converting Enzyme (I/D)and Endothelial Nitric Oxide Synthase Polymorphisms in Patients with Systemic Lupus Erythematosus. Journal of Rheumatology, 31(9), 1756-1762.

George V, Elston RC, Tiwari HK. (2004). Two-Stage Designs for Gene-Disease Association Studies. The 2004 JSM Proceedings.

Kim S, Zhang K, Sun F. (2004). A Comparison of Different Strategies for Computing Confidence Intervals of the Linkage Disequilibrium Measure. Proceeding of Pacific Symposium on Biocomputing, 9, 128-139.

Schulze TG, Zhang K, Chen Y, Akula N, Sun F, McMahon FJ. (2004). Defining Haplotype Blocks and Tag Single-nucleotide Polymorphisms in the Human Genome. Human Molecular Genetics, 35, 335-342.

Shete S, Beasley TM, Etzel C, Fernández JF, Chen J, Allison DB, Amos CI. (2004). Effect of Winsorization on Power and Type 1 Error of Variance Components and Related Methods of QTL Detection. Behavior Genetics, 34, 153-159.

Zhang K, Qin Z, Liu J, Chen T, Waterman M, Sun F. (2004). Haplotype Block Partitioning and Tag SNP Selection Using Genotype Data and Their Applications to Association Studies. Genome Research, 14, 908-916.

Oates JC, Levesque MC, Hobbs MR, Smith EG, Molano ID, Page GP, Hill BS, Weinberg JB, Cooper GS, Gilkeson GS. (2003). Nitric oxide synthase 2 promoter polymorphisms and systemic lupus erythematosus in african-americans. Journal of Rheumatology, 30(1), 60-67.

George, V., Laud, P. (2002). A Bayesian approach to the transmission/disequilibrium test for binary traits. Genetic Epidemiology, 22, 41-51

Allison, D. B., Neale, M. C. (2002). Joint Tests of Linkage & Association for Quantitative Traits. Theoretical Population Biology, 60, 239-51.

Kaplan, D. E., Gaya´n, Ahn, J. J., Won, T. W., Pauls, D., Olson, R. K., DeFries, J. C., Wood, F., Pennington, B. F., Page, G. P., Smith, D., Gruenl, J. R. (2002). Evidence for Linkage and Association with Reading Disability. American Journal of Human Genetics, 70, 1287-1298.

George, V., Tiwari, H.K., Zhu, X., Elston, R.C. (1999). A Test of Transmission/ Disequilibrium for Quantitative traits in Pedigree Data using Multiple Regression. American Journal of Human Genetics, 65, 236-245.

Allison, D. B., Beasley, T. M. (1998). Method and computer program for controlling the family-wise alpha rate in gene association studies involving multiple phenotypes. Genetic Epidemiology, 15, 87-101.